SSc cell atlas

Featureplot of selected genes

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UMAP of the dataset

Plot of selected genes

Show heatmap

Violin Box

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Select study to explore

Original seurat clusters

Select a type of features to visualize

Genes

Pathways

Use my own gene list

Select a gene

Paste gene list:

Or upload a gene list file (.txt or .csv):

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Select pathways

Add my own gene set

Name of your gene set

Paste gene list:

Aggregated interactions per condition, differential interactions, and total comparison.

Differential interactions

Total interactions

Signaling role pattern

Outgoing Incoming Overall

Ligand-receptor pairs across selected source and target cell types.

Stacked (absolute) rankNet

Resolution

Ligand-receptor Pathway

Condition

Download filtered CSV

Select study

Aggregate measure

Strength Count

Condition for drill-down

Applies to the per-condition heatmap and signaling-role scatter.

Filters Applies to the differential circle plot, L-R bubble, rankNet, role heatmap/scatter, and the communication table. The Comparison overview always shows the full aggregated network.

Source cell type(s)

Target cell type(s)

Pathway(s)

Ligand contains

Receptor contains

Minimum probability

Communication table only.

Maximum p-value

L-R bubble and communication table only.

UMAP (Idents)

Feature plot

Expression by cluster / region

Violin Box

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